BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB022B01SP1|AL427856
(798 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig146 595 e-170
>3x_Contig146
Length = 1181
Score = 595 bits (298), Expect = e-170
Identities = 310/316 (98%), Gaps = 1/316 (0%)
Strand = Plus / Minus
Query: 3 gaagtagagaaaagtttccaattaaaccaattgagtgaagaagtacgtgctcacgtgacc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gaagtagagaaaagtttccaattaaaccaattgagtgaagaagtacgtgctcacgtgacc 275
Query: 63 kwcgacawcwataagwaaatcaaatcggagattaagggccaattgtggtcaatagttccg 122
||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gacgacaacaataagaaaatcaaatcggagattaagggccaattgtggtcaatagttccg 215
Query: 123 atagccgccgaag-tgctccttgcgtcggcggaaaggataaccagagccccagatacagt 181
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atagccgccgaaggtgctccttgcgtcggcggaaaggataaccagagccccagatacagt 155
Query: 182 ttgtcaattgtcgacacggccaagcggcatgagatatacaggacgctagttggcggcttt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ttgtcaattgtcgacacggccaagcggcatgagatatacaggacgctagttggcggcttt 95
Query: 242 cccgaatggtgggaagatgaggagctagatttagaactggaacctcaggaaagaatgtcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 cccgaatggtgggaagatgaggagctagatttagaactggaacctcaggaaagaatgtcc 35
Query: 302 ttgtcacttgttttat 317
||||||||||||||||
Sbjct: 34 ttgtcacttgttttat 19
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3994
Number of Sequences: 1807
Number of extensions: 3994
Number of successful extensions: 22
Number of sequences better than 1.0e-20: 1
length of query: 798
length of database: 10,358,551
effective HSP length: 16
effective length of query: 782
effective length of database: 10,329,639
effective search space: 8077777698
effective search space used: 8077777698
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.3 bits)